STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSQ43541.1Hypothetical protein; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)    
Predicted Functional Partners:
OSQ43539.1
Squalene; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.744
OSQ43542.1
Membrane protein; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.616
secF
Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.589
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.575
OSQ43546.1
ATPase AAA; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.537
yajC
Preprotein translocase subunit YajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
       0.501
OSQ49177.1
Gamma-glutamyl cyclotransferase; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
  
     0.477
OSQ46649.1
ATP synthase subunit beta; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
OSQ45659.1
SAM-dependent methyltransferase; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
OSQ48832.1
Molybdenum cofactor biosynthesis protein MoaD; Bacteria available from JCM 18968. Source DNA available from JCM 18968; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.423
Your Current Organism:
Thalassospira alkalitolerans
NCBI taxonomy Id: 1293890
Other names: CECT 8273, JCM 18968, T. alkalitolerans, Thalassospira alkalitolerans Tsubouchi et al. 2014, Thalassospira sp. MBE#61, strain MBE#61
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