STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311885_00225Unannotated protein. (265 aa)    
Predicted Functional Partners:
GCA_001311885_00226
Unannotated protein.
 
 0.999
GCA_001311885_00224
Unannotated protein.
     0.994
GCA_001311885_00054
Unannotated protein.
 
 0.955
GCA_001311885_00053
Unannotated protein.
 
 0.945
GCA_001311885_00052
Unannotated protein.
 
 0.942
GCA_001311885_00740
Unannotated protein.
   
 0.938
GCA_001311885_00741
Unannotated protein.
   
 0.938
GCA_001311885_00051
Unannotated protein.
 
 0.934
GCA_001311885_01879
Unannotated protein.
 
 0.930
GCA_001311885_01880
Unannotated protein.
 
 0.929
Your Current Organism:
Syntrophomonas palmitatica
NCBI taxonomy Id: 1294023
Other names: S. palmitatica JCM 14374, Syntrophomonas palmitatica JCM 14374
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.