STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311885_00947Unannotated protein. (97 aa)    
Predicted Functional Partners:
GCA_001311885_00945
Unannotated protein.
  
 
 0.900
GCA_001311885_00894
Unannotated protein.
  
 
 0.872
GCA_001311885_02254
Unannotated protein.
  
 
 0.872
GCA_001311885_00944
Unannotated protein.
  
  
 0.816
GCA_001311885_00946
Unannotated protein.
     
 0.800
GCA_001311885_00943
Unannotated protein.
  
 
 0.774
GCA_001311885_00948
Unannotated protein.
       0.773
GCA_001311885_00952
Unannotated protein.
  
 
 0.731
GCA_001311885_00953
Unannotated protein.
  
 
 0.731
GCA_001311885_00949
Unannotated protein.
  
 
 0.693
Your Current Organism:
Syntrophomonas palmitatica
NCBI taxonomy Id: 1294023
Other names: S. palmitatica JCM 14374, Syntrophomonas palmitatica JCM 14374
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.