STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311885_01042Unannotated protein. (373 aa)    
Predicted Functional Partners:
GCA_001311885_01041
Unannotated protein.
       0.773
GCA_001311885_01033
Unannotated protein.
 
 
 0.597
GCA_001311885_02264
Unannotated protein.
  
 
 0.544
GCA_001311885_00596
Unannotated protein.
    
  0.521
GCA_001311885_00597
Unannotated protein.
    
  0.521
GCA_001311885_01016
Unannotated protein.
   
 0.494
GCA_001311885_00649
Unannotated protein.
    
  0.484
GCA_001311885_00650
Unannotated protein.
    
  0.484
GCA_001311885_01861
Unannotated protein.
     
 0.483
GCA_001311885_01862
Unannotated protein.
     
 0.483
Your Current Organism:
Syntrophomonas palmitatica
NCBI taxonomy Id: 1294023
Other names: S. palmitatica JCM 14374, Syntrophomonas palmitatica JCM 14374
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.