STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311925_00204Unannotated protein. (453 aa)    
Predicted Functional Partners:
GCA_001311925_00205
Unannotated protein.
 
  
 0.972
GCA_001311925_02398
Unannotated protein.
 
    0.879
GCA_001311925_02399
Unannotated protein.
 
    0.824
GCA_001311925_02870
Unannotated protein.
  
     0.656
GCA_001311925_02020
Unannotated protein.
  
     0.509
GCA_001311925_03542
Unannotated protein.
  
    0.486
GCA_001311925_03722
Unannotated protein.
  
     0.473
GCA_001311925_03477
Unannotated protein.
  
     0.421
GCA_001311925_02697
Unannotated protein.
  
     0.406
GCA_001311925_01013
Unannotated protein.
  
     0.404
Your Current Organism:
Cellulosilyticum ruminicola
NCBI taxonomy Id: 1294025
Other names: C. ruminicola JCM 14822, Cellulosilyticum ruminicola CGMCC 1.5065, Cellulosilyticum ruminicola H1, Cellulosilyticum ruminicola JCM 14822, Clostridium sp. H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.