STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311925_00747Unannotated protein. (221 aa)    
Predicted Functional Partners:
GCA_001311925_00746
Unannotated protein.
 
 
 0.993
GCA_001311925_00203
Unannotated protein.
  
 
 0.984
GCA_001311925_00748
Unannotated protein.
 
 
 0.963
GCA_001311925_03164
Unannotated protein.
    
 0.869
GCA_001311925_03163
Unannotated protein.
    
 0.838
GCA_001311925_03705
Unannotated protein.
    
 0.838
GCA_001311925_03706
Unannotated protein.
    
 0.838
GCA_001311925_00200
Unannotated protein.
 
  
 0.835
GCA_001311925_03459
Unannotated protein.
    
 0.829
GCA_001311925_03663
Unannotated protein.
    
 0.809
Your Current Organism:
Cellulosilyticum ruminicola
NCBI taxonomy Id: 1294025
Other names: C. ruminicola JCM 14822, Cellulosilyticum ruminicola CGMCC 1.5065, Cellulosilyticum ruminicola H1, Cellulosilyticum ruminicola JCM 14822, Clostridium sp. H1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.