STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311925_00945Unannotated protein. (429 aa)    
Predicted Functional Partners:
GCA_001311925_02595
Unannotated protein.
  
 0.996
GCA_001311925_02578
Unannotated protein.
  
 0.988
GCA_001311925_03799
Unannotated protein.
 
      0.900
GCA_001311925_03835
Unannotated protein.
 
      0.900
GCA_001311925_02179
Unannotated protein.
 
 
 0.875
GCA_001311925_03755
Unannotated protein.
   
 0.853
GCA_001311925_01719
Unannotated protein.
  
  
 0.773
GCA_001311925_01073
Unannotated protein.
    
   0.768
GCA_001311925_02401
Unannotated protein.
    
   0.768
GCA_001311925_03139
Unannotated protein.
    
   0.768
Your Current Organism:
Cellulosilyticum ruminicola
NCBI taxonomy Id: 1294025
Other names: C. ruminicola JCM 14822, Cellulosilyticum ruminicola CGMCC 1.5065, Cellulosilyticum ruminicola H1, Cellulosilyticum ruminicola JCM 14822, Clostridium sp. H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.