STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001311925_02054Unannotated protein. (218 aa)    
Predicted Functional Partners:
GCA_001311925_03342
Unannotated protein.
  
    0.987
GCA_001311925_00559
Unannotated protein.
     
 0.672
GCA_001311925_00371
Unannotated protein.
      
 0.606
GCA_001311925_01125
Unannotated protein.
     
 0.577
GCA_001311925_01126
Unannotated protein.
     
 0.553
GCA_001311925_01595
Unannotated protein.
  
  
 0.550
GCA_001311925_02797
Unannotated protein.
  
  
 0.550
GCA_001311925_02055
Unannotated protein.
       0.547
GCA_001311925_02562
Unannotated protein.
      
 0.545
GCA_001311925_01295
Unannotated protein.
   
    0.534
Your Current Organism:
Cellulosilyticum ruminicola
NCBI taxonomy Id: 1294025
Other names: C. ruminicola JCM 14822, Cellulosilyticum ruminicola CGMCC 1.5065, Cellulosilyticum ruminicola H1, Cellulosilyticum ruminicola JCM 14822, Clostridium sp. H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.