STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERK29314.1RpiR family phosphosugar-binding transcriptional regulator; COG1737 Transcriptional regulators. (297 aa)    
Predicted Functional Partners:
ERK29361.1
PTS system beta-glucosides-specific transporter subunit IIABC; COG1264 Phosphotransferase system IIB components.
  
 
 0.877
ERK29917.1
Pyruvate-flavodoxin oxidoreductase NifJ; COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
 
  0.811
ERK29478.1
COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
 
  0.808
ERK29449.1
COG1737 Transcriptional regulators.
  
     0.772
ERK32095.1
COG1737 Transcriptional regulators.
  
     0.767
ERK29919.1
COG1737 Transcriptional regulators.
  
     0.765
ERK31683.1
PTS system transporter subunit IIABC; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
 
 0.764
ERK29373.1
PTS system glucose subfamily transporter subunit IIA; COG2190 Phosphotransferase system IIA components.
  
 
 0.764
ERK28591.1
PTS system glucose-specific transporter subunit IICBA; COG2190 Phosphotransferase system IIA components.
  
 
 0.764
ERK28410.1
PTS system transporter subunit IIA; COG2190 Phosphotransferase system IIA components.
  
 
 0.764
Your Current Organism:
Clostridium intestinale
NCBI taxonomy Id: 1294142
Other names: C. intestinale URNW, Clostridium intestinale URNW
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