STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI25682.1COG4519 Uncharacterized protein conserved in bacteria. (98 aa)    
Predicted Functional Partners:
AGI25683.1
Hypothetical protein.
       0.786
AGI25681.1
Citrate transporter; COG0471 Di- and tricarboxylate transporters.
       0.698
rlmF
23S rRNA mA1618 methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
       0.635
AGI24691.1
COG3103 SH3 domain protein.
  
     0.593
AGI25919.1
Hypothetical protein; COG0392 Predicted integral membrane protein.
  
     0.556
AGI22335.1
Hypothetical protein.
  
     0.543
AGI25904.1
Hypothetical protein; COG2937 Glycerol-3-phosphate O-acyltransferase.
  
     0.473
AGI22596.1
Hypothetical protein; COG0172 Seryl-tRNA synthetase.
  
     0.466
AGI26374.1
Hypothetical protein; COG3264 Small-conductance mechanosensitive channel.
  
     0.459
AGI25945.1
Acyltransferase; COG1835 Predicted acyltransferases.
  
     0.454
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.