STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM03379.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
AHM05496.1
Activator protein; Of hydrogen peroxide-inducible genes; overlaps another CDS with the same product name; Belongs to the LysR transcriptional regulatory family.
  
     0.716
AHM03012.1
Activator protein; Of hydrogen peroxide-inducible genes; Belongs to the LysR transcriptional regulatory family.
  
     0.688
AHM04282.1
Transcriptional activator MetR; Belongs to the LysR transcriptional regulatory family.
  
     0.672
AHM05493.1
Transcriptional regulator OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.551
AHM03380.1
Ribulose-5-phosphate 4-epimerase; And related epimerases and aldolases.
       0.478
AHM03906.1
Hypothetical protein.
  
     0.469
AHM02981.1
Chemotaxis protein methyltransferase CheR.
   
  
 0.425
Your Current Organism:
Roseibacterium elongatum
NCBI taxonomy Id: 1294273
Other names: R. elongatum DSM 19469, Roseibacterium elongatum DSM 19469
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