STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM04771.1Muconolactone isomerase,putative; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (367 aa)    
Predicted Functional Partners:
AHM03055.1
2-dehydro-3-deoxygalactonokinase.
 
 
 0.938
AHM03054.1
2-dehydro-3-deoxyphosphogalactonate aldolase.
   
 0.711
AHM02513.1
Fatty acid desaturase family protein.
 
     0.655
AHM04770.1
Alcohol dehydrogenase.
 
     0.620
AHM02667.1
ABC-type phosphate/phosphonate transport system, periplasmic component.
 
    0.604
AHM02499.1
Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family.
  
     0.536
lcdH
3-hydroxyacyl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.511
AHM04865.1
Metallopeptidase, family M24.
 
     0.501
AHM04158.1
Sarcosine oxidase gamma subunit.
  
     0.465
AHM02515.1
3-hydroxyacyl-CoA dehydrogenase.
 
   
 0.460
Your Current Organism:
Roseibacterium elongatum
NCBI taxonomy Id: 1294273
Other names: R. elongatum DSM 19469, Roseibacterium elongatum DSM 19469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.