STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKS72862.1Formate/nitrite transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
nasD
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.612
AKS72863.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.564
AKS73237.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.564
nasF
uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.544
nasE
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.538
AKS72865.1
Siroheme synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.505
saeP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.467
AKS72861.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
AKS72860.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
Your Current Organism:
Staphylococcus schleiferi
NCBI taxonomy Id: 1295
Other names: ATCC 43808, CCUG 25351, CIP 103643, DSM 4807, LMG 13347, LMG:13347, NCTC 12218, NRRL B-14775, S. schleiferi, strain N850274
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