Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ampSDerived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)    
Predicted Functional Partners:
AKS73241.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.837
AKS73243.1
acyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.832
AKS73239.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
AKS73240.1
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.719
AKS73237.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
AKS73707.1
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.422
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
  
 0.407
Your Current Organism:
Staphylococcus schleiferi
NCBI taxonomy Id: 1295
Other names: ATCC 43808, CCUG 25351, CIP 103643, DSM 4807, LMG 13347, LMG:13347, NCTC 12218, NRRL B-14775, S. schleiferi, strain N850274
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