Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKS73700.1Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)    
Predicted Functional Partners:
AKS73699.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
AKS72543.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
AKS72583.1
Chitosanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
AKS74153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.489
AKS73698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AKS74156.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
AKS73317.1
Transaldolase; Similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
AKS73343.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.447
AKS73697.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
AKS73701.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
Your Current Organism:
Staphylococcus schleiferi
NCBI taxonomy Id: 1295
Other names: ATCC 43808, CCUG 25351, CIP 103643, DSM 4807, LMG 13347, LMG:13347, NCTC 12218, NRRL B-14775, S. schleiferi, strain N850274
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