Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atlAutolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (1323 aa)    
Predicted Functional Partners:
geh
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.741
AKS74032.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.684
tcaA
Teicoplanin resistance protein VanZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
AKS72562.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
nuc
Thermonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.640
AKS73206.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
AKS74319.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
ebpS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.577
AKS73265.1
Glucosamine-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.575
mreD
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
Your Current Organism:
Staphylococcus schleiferi
NCBI taxonomy Id: 1295
Other names: ATCC 43808, CCUG 25351, CIP 103643, DSM 4807, LMG 13347, LMG:13347, NCTC 12218, NRRL B-14775, S. schleiferi, strain N850274
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