Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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Databases
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[Homology]
Score
AKS74166.1Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
AKS74167.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.945
AKS74168.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.885
AKS74169.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.846
AKS74165.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
AKS74156.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.714
AKS74162.1
Phage head-tail adapter protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.705
AKS74164.1
Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.686
AKS74153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.605
AKS74154.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.523
AKS74159.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.519
Your Current Organism:
Staphylococcus schleiferi
NCBI taxonomy Id: 1295
Other names: ATCC 43808, CCUG 25351, CIP 103643, DSM 4807, LMG 13347, LMG:13347, NCTC 12218, NRRL B-14775, S. schleiferi, strain N850274
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