L202_08037 protein (Cryptococcus amylolentus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L202_08037

Uncharacterized protein. (752 aa)

Predicted Functional Partners:

L202_00795

0.997

L202_07056

0.996

L202_02246

0.996

L202_02079

0.995

L202_02095

0.995

L202_01184

0.995

L202_00059

0.995

L202_07969

0.994

L202_07092

0.994

L202_04697

0.994

Your Current Organism:

Cryptococcus amylolentus

NCBI taxonomy Id: 1295533
Other names: C. amylolentus CBS 6039, Cryptococcus amylolentus CBS 6039, Cryptococcus amylolentus CBS6039

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L202_00059	L202_01184	A0A1E3I692	A0A1E3I347	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
L202_00059	L202_02079	A0A1E3I692	A0A1E3HZA4	Uncharacterized protein.	40S ribosomal protein S17.	0.999
L202_00059	L202_02095	A0A1E3I692	A0A1E3I1K4	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
L202_00059	L202_02246	A0A1E3I692	A0A1E3I070	Uncharacterized protein.	Uncharacterized protein.	0.999
L202_00059	L202_04697	A0A1E3I692	A0A1E3HMH2	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
L202_00059	L202_07092	A0A1E3I692	A0A1E3HH77	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
L202_00059	L202_07969	A0A1E3I692	A0A1E3HAT6	Uncharacterized protein.	Ribosomal_L19e domain-containing protein.	0.999
L202_00059	L202_08037	A0A1E3I692	A0A1E3HB28	Uncharacterized protein.	Uncharacterized protein.	0.995
L202_00795	L202_07056	A0A1E3I8L2	A0A1E3HEG6	Uncharacterized protein.	Uncharacterized protein.	0.673
L202_00795	L202_08037	A0A1E3I8L2	A0A1E3HB28	Uncharacterized protein.	Uncharacterized protein.	0.997
L202_01184	L202_00059	A0A1E3I347	A0A1E3I692	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
L202_01184	L202_02079	A0A1E3I347	A0A1E3HZA4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S17.	0.999
L202_01184	L202_02095	A0A1E3I347	A0A1E3I1K4	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
L202_01184	L202_02246	A0A1E3I347	A0A1E3I070	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.999
L202_01184	L202_04697	A0A1E3I347	A0A1E3HMH2	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
L202_01184	L202_07092	A0A1E3I347	A0A1E3HH77	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
L202_01184	L202_07969	A0A1E3I347	A0A1E3HAT6	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal_L19e domain-containing protein.	0.999
L202_01184	L202_08037	A0A1E3I347	A0A1E3HB28	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Uncharacterized protein.	0.995
L202_02079	L202_00059	A0A1E3HZA4	A0A1E3I692	40S ribosomal protein S17.	Uncharacterized protein.	0.999
L202_02079	L202_01184	A0A1E3HZA4	A0A1E3I347	40S ribosomal protein S17.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999