STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I206_02626tRNA pseudouridine(38-40) synthase. (577 aa)    
Predicted Functional Partners:
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.908
I206_02262
Centromere/microtubule-binding protein CBF5.
   
 0.903
I206_03009
tRNA pseudouridine(55) synthase.
   
 0.896
I206_02432
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.796
I206_01287
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.
  
 
 0.785
I206_03379
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.772
I206_02224
DNA-directed RNA polymerase I and III subunit RPAC1.
  
  
 0.772
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.723
I206_02728
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.706
I206_00309
tRNA pseudouridine13 synthase.
   
 
 0.700
Your Current Organism:
Kwoniella pini
NCBI taxonomy Id: 1296096
Other names: Cryptococcus pinus CBS 10737, Cryptococcus pinus CBS10737, K. pini CBS 10737, Kwoniella pini CBS 10737
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