STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I303_00423OTU domain-containing protein 6B. (385 aa)    
Predicted Functional Partners:
I303_05262
E3 ubiquitin-protein ligase TRIP12.
      
 0.545
I303_05156
Ubiquitin thioesterase OTU1.
      
 0.527
I303_08663
Ubiquitin carboxyl-terminal hydrolase.
      
 0.526
I303_07969
Uncharacterized protein; Belongs to the peptidase C19 family.
      
 0.526
I303_04674
USP domain-containing protein; Belongs to the peptidase C19 family.
   
  
 0.523
I303_02831
Ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family.
   
  
 0.505
I303_07279
USP domain-containing protein; Belongs to the peptidase C19 family.
      
 0.493
I303_06655
Ubiquitin thioesterase.
    
 
 0.458
I303_02163
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.455
I303_03635
USP domain-containing protein; Belongs to the peptidase C19 family.
      
 0.446
Your Current Organism:
Kwoniella dejecticola
NCBI taxonomy Id: 1296121
Other names: Cryptococcus dejecticola CBS 10117, K. dejecticola CBS 10117, Kwoniella dejecticola CBS 10117
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