STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000520955_00037Unannotated protein. (246 aa)    
Predicted Functional Partners:
GCA_000520955_00036
Unannotated protein.
 
     0.959
GCA_000520955_01361
Unannotated protein.
   
 0.702
GCA_000520955_01522
Unannotated protein.
   
 0.702
GCA_000520955_01699
Unannotated protein.
   
 0.702
GCA_000520955_01808
Unannotated protein.
   
 0.702
GCA_000520955_02360
Unannotated protein.
   
 0.702
GCA_000520955_03062
Unannotated protein.
   
 0.702
GCA_000520955_04244
Unannotated protein.
    
   0.485
GCA_000520955_00035
Unannotated protein.
       0.400
Your Current Organism:
Aquimarina pacifica
NCBI taxonomy Id: 1296415
Other names: A. pacifica, Aquimarina pacifica Zhang et al. 2014, Aquimarina sp. SW150, CGMCC 1.12180, JCM 18214, strain SW150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.