STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT33324.1Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family. (593 aa)    
Predicted Functional Partners:
SFT75262.1
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.733
SFT84640.1
alpha-L-rhamnosidase.
 0.691
SFT84617.1
alpha-L-rhamnosidase.
 
 0.689
SFT62154.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.663
SFT58365.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.603
SFT84651.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.596
SFT58352.1
Galactokinase galactose-binding signature.
 
  
 0.570
SFT52156.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
 
 0.538
SFT88406.1
Sugar phosphate isomerase/epimerase.
  
  
  0.528
SFT33330.1
Peptide/nickel transport system substrate-binding protein.
       0.520
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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