STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT33792.1Glycosyl hydrolase family 3 N terminal domain-containing protein. (160 aa)    
Predicted Functional Partners:
SFT34403.1
Hypothetical protein.
     
 0.645
SFT42080.1
Hypothetical protein.
  
     0.636
SFT44803.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
    
  0.601
SFT33782.1
Hypothetical protein.
       0.497
SFT33302.1
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.480
SFT93976.1
Excalibur calcium-binding domain-containing protein.
 
  
 0.466
SFT42299.1
Excalibur calcium-binding domain-containing protein.
 
  
 0.465
SFU00044.1
Hypothetical protein.
  
     0.403
SFT68994.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.402
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
Server load: low (18%) [HD]