STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT60656.1Catechol 2,3-dioxygenase. (176 aa)    
Predicted Functional Partners:
SFU03958.1
(R)-ethylmalonyl-CoA mutase.
    
 0.776
SFT60644.1
Hypothetical protein.
       0.774
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.664
SFT69274.1
L-threonine ammonia-lyase.
   
 
  0.631
SFT55864.1
Hypothetical protein.
  
     0.626
SFT85052.1
Pyruvate carboxylase.
  
 
 0.604
SFT43315.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.603
SFT45875.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.586
SFT82315.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.586
SFT93296.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.586
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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