STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT71630.1Stage II sporulation protein E (SpoIIE). (482 aa)    
Predicted Functional Partners:
SFT62622.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.852
SFT71620.1
GAF domain-containing protein.
       0.783
SFT92221.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.774
SFT84073.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.773
SFT61796.1
Signal transduction histidine kinase.
  
 0.772
SFU00883.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.772
SFT51017.1
GAF domain-containing protein.
  
     0.762
SFT91438.1
Anti-anti-sigma factor.
  
 
0.757
SFU06592.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.754
SFT63552.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.753
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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