STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT79496.1SnoaL-like domain-containing protein. (142 aa)    
Predicted Functional Partners:
SFT79507.1
Hypothetical protein.
       0.558
SFT57678.1
Uncharacterized membrane protein YjjP, DUF1212 family.
       0.461
SFT79443.1
Cyclic nucleotide-binding domain-containing protein.
       0.461
SFT79457.1
Thioredoxin reductase (NADPH).
       0.461
nhaA-2
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.461
SFT79480.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
       0.461
SFT79521.1
Helix-turn-helix domain-containing protein.
       0.432
SFT79530.1
Major Facilitator Superfamily protein.
       0.432
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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