STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT94856.1Hypothetical protein. (398 aa)    
Predicted Functional Partners:
SFT94854.1
Histidine kinase.
 
   0.871
SFT91438.1
Anti-anti-sigma factor.
  
 0.843
SFT94848.1
Two component transcriptional regulator, LuxR family.
       0.773
SFT91821.1
Hypothetical protein.
  
    0.602
SFT49954.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.540
SFT57515.1
Signal transduction histidine kinase.
  
  0.540
SFT61859.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.540
SFU02500.1
Histidine kinase.
  
  0.540
SFT57000.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.531
SFT61796.1
Signal transduction histidine kinase.
  
 0.522
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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