STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT96410.1Peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family. (393 aa)    
Predicted Functional Partners:
SFT75607.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.666
SFT35167.1
Colicin V production protein.
 
   
 0.611
SFT96404.1
Colicin import membrane protein.
       0.609
SFT47183.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.545
SFT47230.1
Protein of unknown function.
  
     0.540
SFT99132.1
N-acetylmuramoyl-L-alanine amidase.
 
   
 0.526
SFT96395.1
Hypothetical protein.
 
     0.514
SFU01904.1
Protein of unknown function.
  
     0.504
SFT75569.1
ACT domain-containing protein.
  
     0.476
SFT42688.1
galactofuranosylgalactofuranosylrhamnosyl-N- acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase.
  
     0.431
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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