STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT99311.1Hypothetical protein. (641 aa)    
Predicted Functional Partners:
SFU01929.1
Unsaturated rhamnogalacturonyl hydrolase.
 
  
  0.776
SFT80166.1
Choline dehydrogenase.
  
    0.773
SFT82600.1
DNA-binding transcriptional activator of the SARP family.
  
     0.753
SFT75579.1
Hypothetical protein.
  
     0.751
SFT82528.1
Hypothetical protein.
  
    0.738
SFT66509.1
SIR2-like domain-containing protein.
  
     0.735
SFT79556.1
Hypothetical protein.
  
     0.732
SFT53944.1
Phage integrase, N-terminal SAM-like domain; Belongs to the 'phage' integrase family.
  
     0.730
SFT60476.1
PAP2 superfamily protein.
  
     0.720
SFT86642.1
Cytochrome b5-like Heme/Steroid binding domain-containing protein.
  
     0.718
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.