STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT99446.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (296 aa)    
Predicted Functional Partners:
SFT91438.1
Anti-anti-sigma factor.
 
 0.996
SFT91733.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.987
SFU03952.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.987
SFT61796.1
Signal transduction histidine kinase.
 
 0.977
SFU00883.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.977
SFT67011.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.970
SFT45810.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.963
SFT62113.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.950
SFT79630.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 0.938
SFT75453.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.932
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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