STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU04753.1Site-specific DNA recombinase. (477 aa)    
Predicted Functional Partners:
SFU07130.1
Site-specific DNA recombinase.
 
     0.716
SFU04769.1
Hypothetical protein.
       0.631
SFT80761.1
Putative DNA primase/helicase.
 
  
 0.500
SFU04773.1
Hypothetical protein.
       0.476
SFU04733.1
Hypothetical protein.
       0.470
SFU04742.1
Hypothetical protein.
       0.470
SFU04748.1
Hypothetical protein.
       0.470
SFU04781.1
Hypothetical protein.
       0.407
SFU04786.1
Serine phosphatase RsbU, regulator of sigma subunit.
       0.407
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.