STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU04939.1ABC-2 type transport system permease protein. (262 aa)    
Predicted Functional Partners:
SFU04957.1
ABC-2 type transport system ATP-binding protein.
  
  0.947
SFT33871.1
Lipopolysaccharide transport system ATP-binding protein.
  
 0.929
SFT42727.1
ABC-2 type transport system ATP-binding protein.
  
 0.929
SFU04967.1
Putative adhesin.
 
     0.855
SFT69262.1
ABC-2 type transport system ATP-binding protein.
  
  0.771
SFU04587.1
Oleandomycin transport system ATP-binding protein.
  
  0.771
SFT89047.1
ABC-2 type transport system ATP-binding protein.
  
  0.770
SFT95046.1
ABC-2 type transport system ATP-binding protein.
  
  0.770
SFT68193.1
ABC-2 type transport system ATP-binding protein.
  
  0.764
SFT95061.1
ABC-2 type transporter.
  
     0.745
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.