STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU06439.1Glycine betaine/proline transport system permease protein. (309 aa)    
Predicted Functional Partners:
SFU06447.1
Glycine betaine/proline transport system ATP-binding protein.
 0.999
SFU06453.1
Glycine betaine/proline transport system substrate-binding protein.
 
 
 0.998
SFT36710.1
Osmoprotectant transport system ATP-binding protein.
 
  
 0.718
SFT36720.1
Osmoprotectant transport system permease protein.
 
 
 
0.567
SFT60465.1
Osmoprotectant transport system substrate-binding protein.
  
  
 0.567
SFT36731.1
Osmoprotectant transport system permease protein.
 
 
 
0.564
SFU06459.1
Taurine dioxygenase.
       0.492
purM
Phosphoribosylformylglycinamidine cyclo-ligase.
   
    0.446
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
    0.418
SFT57715.1
Dimethylglycine oxidase; Belongs to the GcvT family.
  
  
 0.410
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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