STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU07638.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (311 aa)    
Predicted Functional Partners:
SFU07653.1
2-polyprenyl-6-methoxyphenol hydroxylase.
 
     0.852
SFU07648.1
Predicted lactoylglutathione lyase.
 
     0.818
SFT65952.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.737
SFU07663.1
Putative cyclase.
 
     0.734
SFT65905.1
Alpha/beta hydrolase family protein; Belongs to the UPF0255 family.
 
     0.692
SFU07658.1
Aminocarboxymuconate-semialdehyde decarboxylase.
 
     0.619
SFT65940.1
Catechol-2,3-dioxygenase.
 
     0.615
SFT73096.1
Glutamate synthase (NADPH/NADH) large chain.
  
  
 0.588
SFU07666.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.586
SFT65985.1
Predicted arabinose efflux permease, MFS family.
  
     0.582
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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