STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU08335.1DDE superfamily endonuclease. (293 aa)    
Predicted Functional Partners:
SFU08331.1
Hypothetical protein.
     0.963
SFU06992.1
Transposase DDE domain-containing protein.
     0.911
SFT73227.1
Hypothetical protein.
  
     0.775
SFT76848.1
Protein of unknown function.
  
  
 0.513
SFT70378.1
Hypothetical protein.
   
    0.461
SFT67469.1
Uncharacterized protein.
  
    0.459
SFT95151.1
Part of AAA domain-containing protein.
  
    0.458
SFT89630.1
5-deoxy-glucuronate isomerase.
   
    0.451
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.