STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU08715.1Transglycosylase SLT domain-containing protein. (284 aa)    
Predicted Functional Partners:
SFU08608.1
Hypothetical protein.
  
 0.878
SFT97554.1
Cell division transport system permease protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.796
SFT35865.1
Tetratricopeptide repeat-containing protein.
 
 
   0.745
SFT44069.1
2'-5' RNA ligase.
  
     0.576
SFT94536.1
Protein of unknown function.
  
     0.544
SFT77856.1
YggT family protein.
 
 
   0.446
SFT65245.1
Helix-turn-helix domain-containing protein.
  
     0.442
SFT46637.1
DNA binding domain-containing protein, excisionase family.
 
     0.430
SFT76896.1
Protein of unknown function.
  
     0.416
SFT51680.1
Sulfotransferase family protein.
  
 
 0.411
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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