STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP93397.1Protein of unknown function DUF1429. (93 aa)    
Predicted Functional Partners:
ALP93398.1
Stage IV sporulation protein.
 
   
 0.943
ALP93924.1
Sporulation sigma-E factor processing peptidase (SpoIIGA); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.798
ALP93391.1
Membrane protein.
 
   
 0.796
ALP94448.1
Hypothetical protein.
  
     0.722
ALP93399.1
Phosphate starvation-inducible protein PhoH, predicted ATPase.
       0.720
ALP93465.1
Hypothetical protein.
  
     0.716
ALP94093.1
Stage III sporulation protein AE.
  
    0.693
ALP93154.1
Hypothetical protein.
  
     0.666
ALP94045.1
Hypothetical protein.
  
   
 0.645
ALP93400.1
Endonuclease containing a URI domain; COG2827.
       0.627
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
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