STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP94039.1N-acetylmuramoyl-L-alanine amidase. (249 aa)    
Predicted Functional Partners:
ALP94675.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.926
ALP93865.1
Hypothetical protein.
     
  0.900
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.828
ALP94040.1
Multi antimicrobial extrusion protein (Na(+)/drug antiporter).
       0.618
ALP94042.1
Polypeptide composition of the spore coat protein CotJC.
 
     0.613
ALP93707.1
Hypothetical protein; FIG00521570.
  
   0.601
ALP92683.1
Hypothetical protein.
    
   0.573
ALP94041.1
Hypothetical protein.
 
     0.555
ALP95074.1
Beta-hexosaminidase.
    
 0.548
ALP94037.1
Putative integrase/recombinase; Belongs to the 'phage' integrase family.
  
    0.543
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.