STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP94697.1Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)    
Predicted Functional Partners:
ALP94696.1
Hypothetical protein.
  
   0.809
ALP95623.1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.706
ALP92980.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.688
ALP95272.1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.661
ALP93276.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.626
ALP95046.1
Hypothetical protein.
  
 
 0.613
ALP94698.1
Hypothetical protein.
       0.554
rpoC
D-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.530
ALP92982.1
Hypothetical protein.
  
 
 0.521
rpoB
D-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.520
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.