STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP94985.1Late competence protein ComEA, D receptor. (118 aa)    
Predicted Functional Partners:
ALP93264.1
Hypothetical protein.
 
  
 0.789
ALP92432.1
Type IV fimbrial assembly protein PilC.
 
  
 0.786
ALP94984.1
Two-component response regulator.
       0.686
ALP93749.1
Competence protein ComEC/Rec2.
 
  
 0.657
ALP94982.1
Spore germination protein.
  
    0.624
ALP92464.1
Hypothetical protein.
   
  
 0.622
ALP94983.1
Phosphate regulon sensor protein PhoR (SphS).
       0.588
ALP94986.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.587
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
     
 0.565
ALP92921.1
Hypothetical protein.
  
  
 0.554
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.