STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALP95271.1Hypothetical protein. (460 aa)    
Predicted Functional Partners:
ALP95272.1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.803
ALP92842.1
Hypothetical protein.
  
 
 0.543
ALP95274.1
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.538
ALP95275.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.538
tdk
Thymidine kinase.
       0.515
rpsF
SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.
  
   0.505
ALP94100.1
Wall-associated protein precursor.
  
 
 0.489
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.484
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.484
ALP93123.1
Cell division protein FtsK.
   
 
 0.468
Your Current Organism:
Intestinimonas butyriciproducens
NCBI taxonomy Id: 1297617
Other names: CCUG 63529, Candidatus Clostridium anorexicus, DSM 26588, I. butyriciproducens, Intestinimonas butyriciproducens Klaring et al. 2013, Pseudoflavonifractor sp. 2-1.1, Pseudoflavonifractor sp. SRB-521-5-I, strain SRB-521-5-I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.