STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG03920.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (228 aa)    
Predicted Functional Partners:
SHG03892.1
Two-component system, OmpR family, sensor kinase/two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
 0.994
SHF86136.1
Histidine kinase domain-containing protein; Hypothetical protein/two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.967
SHE37150.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.895
SHG09650.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.850
SHE39124.1
Signal transduction histidine kinase.
  
  0.826
SHF70363.1
Signal transduction histidine kinase.
 
  0.819
SHF43675.1
PAS domain S-box-containing protein.
 
 0.815
SHF41788.1
Signal transduction histidine kinase.
 0.812
SHF89393.1
PAS domain S-box-containing protein.
 
 0.799
nuoD
NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
    
   0.755
Your Current Organism:
Bacteroides luti
NCBI taxonomy Id: 1297750
Other names: B. luti, Bacteroides luti Hatamoto et al. 2014, Bacteroides sp. UasXn-3, DSM 26991, JCM 19020, strain UasXn-3
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