STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TST_0123Conserved hypothetical protein; Cupin 2 domain-containing protein. (112 aa)    
Predicted Functional Partners:
dgcB
Diguanylate cyclase.
       0.773
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.564
TST_0131
Iron complex transport system substrate-binding protein.
   
   0.470
TST_0125
Porin; Belongs to the OprB family.
       0.440
TST_0127
Antibiotic transport system ATP-binding protein.
     
 0.431
TST_0129
Iron complex transport system permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.431
cbiK
Sirohydrochlorin cobaltochelatase.
       0.427
TST_0128
Antibiotic transport system permease.
       0.427
TST_0130
Iron complex transport system ATP-binding protein.
       0.427
cobA
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.427
Your Current Organism:
Thermosulfidibacter takaii
NCBI taxonomy Id: 1298851
Other names: T. takaii ABI70S6, Thermosulfidibacter takaii ABI70S6
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