Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TST_0135 | TST_1316 | TST_0135 | TST_1316 | Hypothetical protein; Similar to cytochrome c class III. | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | 0.563 |
| TST_0135 | dnaG | TST_0135 | TST_0136 | Hypothetical protein; Similar to cytochrome c class III. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.546 |
| TST_0135 | sigA | TST_0135 | TST_0137 | Hypothetical protein; Similar to cytochrome c class III. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.683 |
| TST_0194 | rpoA | TST_0194 | TST_1407 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.922 |
| TST_0194 | rpoB | TST_0194 | TST_1442 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.932 |
| TST_0194 | rpoC | TST_0194 | TST_1441 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.930 |
| TST_0194 | rpoZ | TST_0194 | TST_0406 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.928 |
| TST_0194 | sigA | TST_0194 | TST_0137 | CarD family transcriptional regulator. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.914 |
| TST_0492 | sigA | TST_0492 | TST_0137 | Hypothetical protein. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.631 |
| TST_1316 | TST_0135 | TST_1316 | TST_0135 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | Hypothetical protein; Similar to cytochrome c class III. | 0.563 |
| TST_1316 | rpoA | TST_1316 | TST_1407 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.640 |
| TST_1316 | rpoB | TST_1316 | TST_1442 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.749 |
| TST_1316 | rpoC | TST_1316 | TST_1441 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.624 |
| TST_1316 | rpoZ | TST_1316 | TST_0406 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.624 |
| TST_1316 | sigA | TST_1316 | TST_0137 | Fused protein of MerR family transcriptional regulator, heat shock protein HspR and iron-molybdenum cofactor-binding protein. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.578 |
| dnaG | TST_0135 | TST_0136 | TST_0135 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein; Similar to cytochrome c class III. | 0.546 |
| dnaG | nusA | TST_0136 | TST_0101 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | N utilization substance protein A; Participates in both transcription termination and antitermination. | 0.435 |
| dnaG | sigA | TST_0136 | TST_0137 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.983 |
| nusA | dnaG | TST_0101 | TST_0136 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.435 |
| nusA | rpoA | TST_0101 | TST_1407 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
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