STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilRTwo-component system, NtrC family, response regulator PilR. (416 aa)    
Predicted Functional Partners:
atoS
Two-component system, NtrC family, sensor histidine kinase AtoS.
 0.972
TST_0776
Two-component system sensor histidine kinase.
 
 
 0.932
glnL
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
 
 
 0.877
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.806
TST_1043
Two-component hybrid sensor and regulator; GAF domain protein.
 
 
 0.782
TST_0774
Pseudogene. MoxR-like ATPase. This CDS appears to have a frameshift mutation.
       0.773
flhG
Flagellar biosynthesis protein FlhG.
  
 
 0.678
cheA
Two-component system, chemotaxis family, sensor kinase CheA.
  
 
 0.664
fliM
Flagellar motor switch protein FliM.
  
  
 0.660
cheV
Two-component system, chemotaxis family, response regulator CheV.
  
 
 0.657
Your Current Organism:
Thermosulfidibacter takaii
NCBI taxonomy Id: 1298851
Other names: T. takaii ABI70S6, Thermosulfidibacter takaii ABI70S6
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