Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TST_0189 | TST_0856 | TST_0189 | TST_0856 | Cytochrome c biogenesis protein. | Cytochrome c-type biogenesis protein. | 0.692 |
TST_0189 | resB | TST_0189 | TST_0190 | Cytochrome c biogenesis protein. | Cytochrome c biogenesis protein. | 0.990 |
TST_0852 | TST_0854 | TST_0852 | TST_0854 | Peptidase S16, lon domain-containing protein. | Hypothetical protein. | 0.773 |
TST_0852 | TST_0856 | TST_0852 | TST_0856 | Peptidase S16, lon domain-containing protein. | Cytochrome c-type biogenesis protein. | 0.746 |
TST_0852 | cmk | TST_0852 | TST_0853 | Peptidase S16, lon domain-containing protein. | Cytidylate kinase. | 0.773 |
TST_0852 | fmt | TST_0852 | TST_0855 | Peptidase S16, lon domain-containing protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.746 |
TST_0852 | ligA | TST_0852 | TST_0857 | Peptidase S16, lon domain-containing protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.746 |
TST_0854 | TST_0852 | TST_0854 | TST_0852 | Hypothetical protein. | Peptidase S16, lon domain-containing protein. | 0.773 |
TST_0854 | TST_0856 | TST_0854 | TST_0856 | Hypothetical protein. | Cytochrome c-type biogenesis protein. | 0.749 |
TST_0854 | cmk | TST_0854 | TST_0853 | Hypothetical protein. | Cytidylate kinase. | 0.784 |
TST_0854 | fmt | TST_0854 | TST_0855 | Hypothetical protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.762 |
TST_0854 | ligA | TST_0854 | TST_0857 | Hypothetical protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.757 |
TST_0856 | TST_0189 | TST_0856 | TST_0189 | Cytochrome c-type biogenesis protein. | Cytochrome c biogenesis protein. | 0.692 |
TST_0856 | TST_0852 | TST_0856 | TST_0852 | Cytochrome c-type biogenesis protein. | Peptidase S16, lon domain-containing protein. | 0.746 |
TST_0856 | TST_0854 | TST_0856 | TST_0854 | Cytochrome c-type biogenesis protein. | Hypothetical protein. | 0.749 |
TST_0856 | ccsB | TST_0856 | TST_1778 | Cytochrome c-type biogenesis protein. | Cytochrome c-type biogenesis protein CcsB. | 0.680 |
TST_0856 | cmk | TST_0856 | TST_0853 | Cytochrome c-type biogenesis protein. | Cytidylate kinase. | 0.746 |
TST_0856 | fmt | TST_0856 | TST_0855 | Cytochrome c-type biogenesis protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.773 |
TST_0856 | ligA | TST_0856 | TST_0857 | Cytochrome c-type biogenesis protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.773 |
TST_0856 | msrA | TST_0856 | TST_0355 | Cytochrome c-type biogenesis protein. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.580 |
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