STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EXF50294.1IMG reference gene:2526023074; PFAM: TPR repeat; TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein. (924 aa)    
Predicted Functional Partners:
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.970
EXF49460.1
Putative PEP-CTERM system TPR-repeat lipoprotein; IMG reference gene:2526022222; PFAM: Tetratricopeptide repeat; TPR repeat; TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
 
 0.952
EXF50477.1
Tfp pilus assembly protein PilF; IMG reference gene:2526023263; PFAM: Tetratricopeptide repeat; TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
 
 0.952
EXF50288.1
Putative phosphohydrolase; IMG reference gene:2526023068; PFAM: Calcineurin-like phosphoesterase.
 
  
 0.883
EXF50624.1
TPR repeat; IMG reference gene:2526023417; PFAM: TPR repeat.
 
 0.854
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.852
EXF50050.1
IMG reference gene:2526022829; PFAM: Peptidase_C39 like family.
 
 0.852
EXF50306.1
Signal transduction histidine kinase; IMG reference gene:2526023086; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain.
    
 0.850
EXF50323.1
Methyl-accepting chemotaxis sensory transducer with Cache sensor; IMG reference gene:2526023103; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signalling domain.
   
  0.833
EXF48047.1
TPR repeat; IMG reference gene:2526020732; PFAM: TPR repeat.
  
 0.824
Your Current Organism:
Alteromonas sp. ALT199
NCBI taxonomy Id: 1298865
Other names: A. sp. ALT199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.