STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS47135.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
CUS47136.1
LPP20 lipoprotein.
       0.757
CUS47137.1
LPP20 lipoprotein.
       0.757
Ga0003345_0060
Toxin-antitoxin system antidote component.
       0.470
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.442
galU
UDP-glucose pyrophosphorylase.
       0.413
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.