STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimKSSU ribosomal protein S6P modification protein; Belongs to the RimK family. (301 aa)    
Predicted Functional Partners:
CUS47295.1
Uncharacterized conserved protein.
     0.994
CUS47297.1
Hypothetical protein.
     0.951
rsmC
16S rRNA (guanine1207-N2)-methyltransferase.
       0.616
CUS47299.1
Hypothetical protein; Non-canonical start codon; manually curated.
       0.563
CUS47301.1
HAMP domain-containing protein.
       0.521
CUS47298.1
Hpt domain-containing protein.
       0.490
CUS47294.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
       0.483
gshA
Glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.434
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.