STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhRTranscriptional regulator, GntR family. (250 aa)    
Predicted Functional Partners:
aceE
Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
 0.786
aceF
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.763
fadR
Transcriptional regulator, GntR family; Multifunctional regulator of fatty acid metabolism.
  
   
 0.606
hutC
GntR family transcriptional regulator, histidine utilization repressor.
  
    0.572
ampE
AmpE protein.
       0.559
lpd
Dihydrolipoamide dehydrogenase.
  
  
 0.534
ampD
AmpD protein.
       0.517
pir
FAD/FMN-containing dehydrogenase.
     
 0.475
CUS49306.1
AraC-type DNA-binding protein.
  
  
 0.457
zapC
Cell division protein ZapC.
  
 
   0.455
Your Current Organism:
Idiomarinaceae bacterium HL53
NCBI taxonomy Id: 1298881
Other names: I. bacterium HL-53, Idiomarina sp. HL-53, Idiomarinaceae bacterium HL-53
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